The mechanisms by which hepatitis C virus (HCV) induces chronic infection i
n the vast majority of infected individuals are unknown. Sequences within t
he HCV E1 and E2 envelope genes were analyzed during the acute phase of hep
atitis C in 12 patients with different clinical outcomes. Acute resolving h
epatitis was associated with relative evolutionary stasis of the heterogene
ous viral population (quasispecies), whereas progressing hepatitis correlat
ed with genetic evolution of HCV. Consistent with the hypothesis of selecti
ve pressure by the host immune system, the sequence changes occurred almost
exclusively within the hypervariable region 1 of the E2 gene and were temp
orally correlated with antibody seroconversion. These data indicate that th
e evolutionary dynamics of the HCV quasispecies during the acute phase of h
epatitis C predict whether the infection will resolve or become chronic.