Repeated copies of genes, whether in tandem or dispersed, are often recogni
zed by the cell and silenced. Tandem repeat silencing is associated with a
heterochromatin-like complex. Dispersed gene silencing can be mediated by t
he repressive Polycomb Group complex or involve post-transcriptional silenc
ing presumably involving double-stranded RNA. The I retrotransposable eleme
nt in Drosophila appears to be susceptible to dispersed gene silencing, pot
entially by both posttranscriptional and transcriptional processes. Some mu
tations that eliminate RNA interference in Caenorhabditis elegans result in
the mobilization of many transposons and two of these mutations desilence
tandem repeats in the germline. One challenge for the future is to determin
e the nature of any relationship between post-transcriptionally and transcr
iptionally based mechanisms. The silencing mechanisms potentially act as a
protection against high expression of transposons and viruses.