A previously unrecognized mismatch repair activity is described. Extracts o
f immortalized MSH2-deficient mouse fibroblasts did not correct most single
base mispairs. The same extracts carried out efficient repair of A/C misma
tches. A/G mispairs were less efficiently corrected and there was no signif
icant repair of A/A. MLH1-defective mouse extracts also repaired an A/C mis
pair. A/C correction by Msh2(-/-) mouse cell extracts was not affected by a
ntibodies against the PMS2 protein, which inhibited long-patch mismatch rep
air. A/C repair activity is thus independent of MutS alpha, MutS beta and M
utL alpha. A/C mismatches were corrected 5-fold more efficiently by extract
s of Msh2 knockout mouse cells than by comparable extracts prepared from hM
SH2- or hMLH1-deficient human cells, MSH2-independent A/C correction by mou
se cell extracts did not require a nick in the circular duplex DNA substrat
e. Repair involved replacement of the A and was associated with the resynth
esis of a limited stretch of less than or equal to 25 bases of DNA.