We describe the sequence for the complete genome of spinach latent vir
us (SpLV). Comparisons of this genome with that of the only other comp
lete genome described for a species within the genus Ilarvirus (citrus
leaf rugose virus - CiLRV) indicate that while there are marked diffe
rences between the RNA 3 of the two viruses, their respective RNAs 1 a
nd 2 share many similarities. However, the putative 2a protein of SpLV
contains a C2H2 type ''zinc finger''-like motif located towards the c
arboxy terminal of the protein which is absent in CiLRV and has not be
en reported for other members of the family Bromoviridae. A second ope
n reading frame (2b), located at a similar position to that described
for the cucumoviruses, occurs in the RNA 2 of both SpLV and CiLRV. The
putative coat protein of SpLV is similar to that of citrus variegatio
n virus (CVV) and asparagus virus 2 (AV-2), both members of subgroup 2
of the ilarviruses, We have subsequently demonstrated a serological r
elationship between SpLV and other viruses in subgroup 2 and suggest t
hat SpLV should be included in this subgroup rather than remain in a s
eparate group (subgroup 6). However, while the putative movement prote
in of SpLV is remarkably similar to that of AV-2, it shows little rela
tionship with the corresponding protein of CVV and the lack of similar
ity suggests that a recombination event may have occurred in the past.
The relationship between the genera Alfamovirus and Ilarvirus is disc
ussed in the light of the data for the genome of SpLV and recently pub
lished information for other members of the genus Ilarvirus.