Holliday junction resolving enzymes bind specifically to four-way DNA junct
ions created by the process of homologous recombination, cleaving them to y
ield recombinant duplex DNA products. Homologous recombination is known to
occur in the third domain of life, the archaea, and may constitute a simpli
fied model for the corresponding eucaryal pathway, but has not been well ch
aracterised. Identification of a gene encoding an archaeal Holliday junctio
n resolving enzyme, Hjc, has recently been reported in the euryarchaea, and
an activity has been observed in the hyperthermophilic crenarchaeote Sulfo
lobus solfataricus. Here we report the identification, heterologous express
ion and characterisation of the Hjc protein from Sulfolobus. We demonstrate
that Sulfolobus has two distinct junction resolving enzymes, Hjc and Hje,
with differing substrate specificities. (C) 2000 Academic Press.