Remains of barley (Hordelun vulgare) grains found at archaeological sites i
n the Fertile Crescent indicate that about 10,000 years ago the crop was do
mesticated there from its wild relative Hordeum spontaneum. The domesticati
on history of barley is revisited based on the assumptions that DNA markers
effectively measure genetic distances and that wild populations are geneti
cally different and they have not undergone significant change since domest
ication. The monophyletic nature of barley domestication is demonstrated ba
sed on allelic frequencies at 400 AFLP polymorphic loci studied in 317 wild
and 57 cultivated lines. The wild populations from Israel-Jordan are molec
ularly more similar than are any others to the cultivated gene pool. The re
sults provided support for the hypothesis that the Israel-Jordan area is th
e region in which barley was brought into culture. Moreover, the diagnostic
allele I of the homeobox gene BKn-3, rarely but almost exclusively found i
n Israel H. spontaneum, is pervasive in western landraces and modern cultiv
ated varieties. In landraces from the Himalayas and India, the BKn-3 allele
IIIa prevails, indicating that an allelic substitution has taken place dur
ing the migration of barley from the Near East to South Asia. Thus, the Him
alayas can be considered a region of domesticated barley diversification.