Cryptochromes are blue light photoreceptors found in both plants and animal
s. They probably evolved from photolyases, which are blue/UV-light-absorbin
g photoreceptors involved in DNA repair. In seed plants, two different cryp
tochrome (CRY) genes have been found in Arabidopsis and one in Sinapis, whi
le three genes have been found in the fern Adiantum. We report the characte
risation of tomato CRY genes CRY1 and CRY2. They map to chromosomes 4 and 9
, respectively, show relatively constitutive expression and encode proteins
of 679 and 635 amino acids, respectively. These proteins show higher simil
arity to their Arabidopsis counterparts than to each other, suggesting that
duplication between CRY1 and CRY2 is an ancient event in the evolution of
seed plants. The seed plant cryptochromes form a group distinct from the fe
rn cryptochromes, implying that only one gene was present in the common anc
estor between these two groups of plants. Most intron positions in CRY gene
s from plants and ferns are highly conserved. Tomato cry1 and cry2 proteins
carry C-terminal domains 210 and 160 amino acids long, respectively. Sever
al conserved motifs are found in these domains, some of which are common to
both types of cryptochromes, while others are cryptochrome-type-specific.