The different procedures used in HPLC to measure the pH of a mobile phase a
re evaluated in terms of the rigorous IUPAC definition of pH. The three pro
cedures evaluated are as follows: measurement of the pH of the aqueous HPLC
buffer before mixing it with the organic modifier, measurement of the pH o
f the HPLC buffer after mixing it with the organic modifier using a pH elec
trode system calibrated with aqueous buffers, and measurement of the pH of
the HPLC buffer after mixing it with the organic modifier but calibrating t
he electrode system with reference buffers prepared in the same mixed solve
nt used as mobile phase. Following IUPAC definitions and recommendations, t
he three pH values can be related with the pH scales: (w)(w)pH, (s)(w)pH, a
nd (s)(s)pH, respectively. The relationships between these three pH scales
are also presented. The retention of several compounds with acid/ base beha
vior in a C-18 and a polymeric column with buffered methanol/water as mobil
e phase is related to the mobile phase pH value measured in the three pH sc
ales. It is demonstrated that the (s)(w)pH and (sPH)-P-s scales give better
relationships than the (w)(w)pH scale (pH measured in the aqueous buffer b
efore mixing it with the organic modifier), commonly used on HPLC. The (s)(
w)pH scale is specially recommended because of its simplicity of measuremen
t: the pH is measured after mixing the aqueous buffer with the organic modi
fier, but the pH calibration is performed with the common aqueous reference
buffers.