K. Nonomura et al., CYTOGENETICAL GENE-MAPPING BY RECIPROCAL TRANSLOCATION AND TERTIARY TRISOMIC ANALYSES IN RICE (ORYZA-SATIVA L), Genes & genetic systems, 72(1), 1997, pp. 41-49
The orientation of RFLP linkage map and the assignment of RFLP markers
to the restricted chromosomal segment were determined on seven pachyt
ene chromosomes (1, 3, 4, 5, 8, 9 and 12) of rice. A total of 24 inter
change breakpoints were detected by pachytene analysis of reciprocal t
ranslocation (RT) heterozygotes derived from crosses between 12 RT lin
es and normal diploid varieties. Further, 19 strains of japonica-indic
a hybrid tertiary trisomics were developed and provided for RFLP gene
dosage analysis, resulting in locating 32 breakpoints of the extra ter
tiary chromosomes within genetic linkage segments defined by RFLP mark
ers. From these results, the orientation of RFLP linkage groups on pac
hytene chromosomes and the assignment of 113 RFLP markers and four clo
ned rice genes to chromosome arms were conducted, together with the de
limitation of centromeres on 6 RFLP linkage groups (1, 3, 4, 8, 9 and
12). Meanwhile, 15 groups of RFLP markers were incorporated with the r
estricted segments of pachytene chromosome. Compared with RFLP map, th
e physical distance of a part of the long arm of chromosome 1 was 5.4
to 8.8 cM/mu m at the pachytene stage.