Dy. Lando et Vb. Teif, Long-range interactions between ligands bound to a DNA molecule give rise to adsorption with the character of phase transition of the first kind, J BIO STRUC, 17(5), 2000, pp. 903-911
Influence of long-range interactions between ligands bound to DNA molecule
on the character of their adsorption is studied using computer modeling. Fo
r this investigation, two calculation procedures are developed. They are ba
sed upon the method of the free energy minimum and on the partition functio
n method. The both procedures demonstrate that in the case of a strong enou
gh attraction between all the bound ligands their binding to DNA has the ch
aracter of phase transition of the first kind. There is a break in the bind
ing curve e(c(o)) where c - relative concentration of bound ligands, c,- mo
lar concentration of free ligands. The break occurs because there is an int
erval of central degrees of binding (similar to 50% of the maximum c value)
that are prohibited for individual DNA molecules. Such a transition might
be caused by some types of DNA condensation. Attraction between the neighbo
ring ligands only, adjacent or/and separated by double helix regions, does
not cause this effect.