This review provides a comparative analysis of the expression patterns, fun
ctions, and biochemical properties of Msx and Dix homeobox genes. These com
prise multi-gene families that are closely related with respect to sequence
features as well as expression patterns during vertebrate development. Thu
s, members of the Msx and Dir families are expressed in overlapping, but di
stinct, patterns and display complementary or antagonistic functions, depen
ding upon the context. A common theme shared among Msx and Dir genes is tha
t they are required during early, middle, and late phases of development wh
ere their differential expression mediates patterning, morphogenesis, and h
istogenesis of tissues in which they are expressed. With respect to their b
iochemical properties, Msx proteins function as transcriptional repressors,
while Dir proteins are transcriptional activators. Moreover, their ability
to oppose each other's transcriptional actions implies a mechanism underly
ing their complementary or antagonistic functions during development. (C) 2
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