Chloroplast structure and genome analyses support the hypothesis that three
groups of organisms originated from the primary photosynthetic endosymbios
is between a cyanobacterium and a eukaryotic host: green plants (green alga
e + land plants), red algae and glaucophytes (for example, Cyanophora)(1).
Although phylogenies based on several mitochondrial genes support a specifi
c green plants/red algae relationship(2,3), the phylogenetic analysis of nu
cleus-encoded genes yields inconclusive, sometimes contradictory results(3,
4). To address this problem, we have analysed an alternative nuclear marker
, elongation factor 2, and included new red algae and protist sequences. He
re we provide significant support for a sisterhood of green plants and red
algae. This sisterhood is also significantly supported by a multi-gene anal
ysis of a fusion of 13 nuclear markers (5,171 amino acids). In addition, th
e analysis of an alternative fusion of 6 nuclear markers (1,938 amino acids
) indicates that glaucophytes may be the closest relatives to the green pla
nts/red algae group. Thus, our study provides evidence from nuclear markers
for a single primary endosymbiosis at the origin of these groups, and supp
orts a kingdom Plantae comprising green plants, red algae and glaucophytes(
5).