Two microsatellite instability (MSI) phenotypes have been described in colo
rectal cancer (CRC): MSI-H (instability at >30% of the loci examined) and M
SI-L (MSI at 1-30% of the loci examined). The MSI-H phenotype, observed in
both hereditary nonpolyposis colon cancer-associated CRC and approximately
15% of sporadic CRC, generally results from mutational or epigenetic inacti
vation of the DNA mismatch repair (MMR) genes hMSH2 or hMLH1, The genetic b
asis for the MSI-L phenotype, however, is unknown. Several other proteins,
including hMSH3 and hMSH6, also participate in DNA MMR. Inactivating mutati
ons of MSH6 in yeast and human tumor cell lines are associated with an impa
ired ability to repair single-base mispairs and small insertion-deletion lo
ops but not large insertion-deletion loops. This suggests that hMSH6 mutati
ons are more likely to be associated with a MSI-L phenotype than a MSI-H ph
enotype in CRC. To explore this possibility, we screened tumors from 41 pat
ients with MSI-L CRC for hMSH6 mutations with conformation-sensitive gel el
ectrophoresis (CSGE) and for hMSH6 protein expression by immunohistochemist
ry. Alterations found with CSGE were confirmed by DNA sequencing of normal
and tumor tissue. One somatic (Asp389Asn) and 15 germ-line changes were fou
nd. Of the 15 germ-line changes, 9 were found in an intron (none involving
splice junctions), and 6 were found in an exon (Gly39Glu, Leu395Val, and 4
silent alterations). Immunohistochemical staining for hMSH6 performed on 34
of the 41 tumors revealed strong nuclear hMSH6 expression in all of the ca
ses. Overall, our results suggest that hMSH6 mutations do not play a major
role in the development of sporadic CRC with a MSI-L phenotype.