Phylogenetic relationships within the suborder Trypanosomatina were inferre
d from the kinetoplast DNA minicircle conserved region sequences. Trees bui
lt using distance-matrix (Neighbor-Joining) acid maximum parsimony methods
showed that the minicircle conserved regions (CRs) provide a sensitive and
specific molecular marker suitable for phylogenetic analyses of subspecies
and strains of trypanosomatid flagellates, as testified by the subdivision
of the genus Leishmania into the subgenera Leishmania, Viannia and Saurolei
shmania. However, since Phytomonas and monogenetic parasites of insects rep
resent the earliest diverging groups, the CRs do not seem to be useful for
inference of relationships among major lineages of the order Kinetoplastida
.