Mouse microphthalmia transcription factor (Mitf) mutations affect the devel
opment of four cell types: melanocytes, mast cells, osteoclasts, and pigmen
ted epithelial cells of the eye. The mutations are phenotypically diverse a
nd can be arranged in an allelic series. In humans, MITF mutations cause Wa
ardenburg syndrome type 2A (WS2A) and Tietz syndrome, autosomal dominant di
sorders resulting in deafness and hypopigmentation. Mitf mice thus represen
t an important model system for the study of human disease. Here we report
the complete exon/intron structure of the mouse Mitf gene and show it to be
similar to the human gene. We also found that the mouse gene is transcript
ionally complex and is capable of generating at least 13 different Mitf iso
forms. Some of these isoforms are missing important functional domains of t
he protein, suggesting that they might play an inhibitory role in Mitf func
tion and signal transduction. In addition, we determined the molecular basi
s for six microphthalmia mutations. Two of the mutations are reported for t
he first time here (Mitf(mi-enu198) and Mitf(mi-x39)), while the others (Mi
tf(mi-ws), Mitf(mi-bws), Mitf(mi-ew), and Mitf(mi-di)) have been described
but the molecular basis for the mutation nor determined. When analyzed in t
erms of the genomic and transcriptional data presented here, it is apparent
that these mutations result from RNA processing or transcriptional defects
. Interestingly, three of the mutations (Mitf(mi-x39), Mitf(mi-bws), and Mi
tf(mi-ws)) produce proteins that are missing important functional domains o
f the protein identified in in vitro studies, further confirming a biologic
al role for these domains in the whole animal.