The relationship between species diversity and ecosystem functioning is a c
entral topic in ecology today(1,2). Classical approaches to studying ecosys
tem responses to nutrient enrichment have considered linear food chains(3,4
). To what extent ecosystem structure, that is, the network of species inte
ractions, affects such responses is currently unknown. This severely limits
our ability to predict which species or functional groups will benefit or
suffer from nutrient enrichment and to understand the underlying mechanisms
(5-8). Here our approach takes ecosystem complexity into account(6,9,10) by
considering functional diversity at each trophic level(11-14). We conducte
d a mesocosm experiment to test the effects of nutrient enrichment in a lak
e ecosystem. We developed a model of intermediate complexity, which separat
es trophic levels into functional groups according to size and diet. This m
odel successfully predicted the experimental results, whereas linear food-c
hain models did not. Our model shows the importance of functional diversity
and indirect interactions in the response of ecosystems to perturbations,
and indicates that new approaches are needed for the management of freshwat
er ecosystems subject to eutrophication.