N. Declerck et al., HYPERTHERMOSTABLE MUTANTS OF BACILLUS-LICHENIFORMIS ALPHA-AMYLASE - THERMODYNAMIC STUDIES AND STRUCTURAL INTERPRETATION, Protein engineering, 10(5), 1997, pp. 541-549
This paper provides further understanding of the thermodynamic and str
uctural features determining the stability of Bacillus licheniformis a
lpha-amylase (BLA) at two crucial positions, His133 and Ala209. Result
s of protein modelling and saturated site-directed mutagenesis at posi
tion 133 and 209 have been reported in a previous paper (Declerck ef a
l., 1995, Prot. Engng, 8, 1029-1037). In the first part of the present
work, evidence is presented supporting the hypothesis that the stabil
izing mutations reduce the rate of initial unfolding of the enzyme dur
ing the reversible step of the inactivation reaction and do not modify
the irreversible processes undergone subsequently by the unfolded mol
ecules. In the second part, we have examined the three-dimensional str
ucture of BLA which has been determined recently by X-ray analysis (Ma
chius et al., 1995, J. Mol. Biol., 246, 545-559). This analysis showed
that our previous predictions made from molecular modelling were part
ly correct. At position 209, the effect of the stabilizing substitutio
ns can be explained by a groove-filling effect reinforcing the hydroph
obic packing between two helices of the central domain, while preservi
ng a well-ordered water structure at the surface. At position 133, the
stabilizing substitutions must compensate the loss of the hydrogen bo
nd network in which the original histidine side-chain is involved; thi
s compensation could be achieved through enhanced hydrophobic side-cha
in interactions within the P-sheet where residue 133 is located, which
correlates with the propensity of the residue to form and maintain a
beta-strand conformation of the main chain at this position.