To isolate microbial proteins capable of binding the third component of com
plement (C3), we coupled the free sulfhydryl group of methylamine-inactivat
ed C3 to a thiolSepharose matrix. This simple technique facilitated the pur
ification of the first C3-binding protein isolated from a bacterium (Strept
ococcus pneumoniae). Both metastable (native) and thioester-disrupted C3 we
re recognized by this protein; binding of C3 was noncovalent, independent o
f thioester conformation, and preferential for the C3 cc-chain. Sequencing
of amino-terminal and internal peptides from the C3-binding protein disclos
ed a proline-rich region spanning approximately 20 amino acids and a signal
peptide that had not been previously reported. The gene was isolated from
a library of genomic DNA from laboratory strain CP1200 by screening with a
1200 bp PCR product amplified from degenerate oligonucleotides encoding the
amino terminal sequence and the internal proline-rich sequence. The open r
eading frame spanned 1692 bp; all peptide sequences were identified in the
translated gene product, which also contained at least three choline-bindin
g repeats at the carboxy-terminus. The gene was conserved and the translate
d protein was functionally active in pneumococcal clinical isolates of sero
types 1, 3, 4, 14, and 19F. Serum from a patient recovering from acute pneu
mococcal infection contained IgG antibodies specific for this protein by im
munoblot. Wide conservation among clinical isolates, saturable binding of C
3, and the ability to stimulate the human immune response have not previous
ly been reported for this choline-binding protein. A similar biochemical ap
proach should enable the identification of other C3-binding proteins in mic
roorganisms able to elude complement-mediated host defense.