Southern and in situ hybridization were used to examine the chromosome
constitution, genomic relationships, repetitive DNA sequences, and nu
clear architecture in durum wheat x tritordeum hybrids (2n = 5x = 35),
where tritordeum is the fertile amphiploid (2n = 6x = 42) between Hor
deum chilense and durum wheal. Using in situ hybridization, H. chilens
e total genomic DNA hybridized strongly to the H. chilense chromosomes
and weakly to the wheat chromosomes, which showed some strongly label
led bands. pHcKB6, a cloned repetitive sequence isolated from H. chile
nse, enabled the unequivocal identification of each H. chilense chromo
some at metaphase. Analysis of chromosome disposition in prophase nucl
ei. using the same probes. showed that the chromosomes of H. chilense
origin were in individual domains with only limited intermixing with c
hromosomes of wheat origin. Six major sites of 18S-26S rDNA genes were
detected on the chromosomes of the hybrids. Hybridization to Southern
transfers of restriction enzyme digests using genomic DNA showed some
variants of tandem repeats, perhaps owing to methylation. Both techni
ques gave complementary information, extending that available from phe
notypic, chromosome morphology, or isozyme analysis, and perhaps are u
seful for following chromosomes or chromosome segments during further
crossing of the lines in plant breeding programs.