The budding yeast Saccharomyces cerevisiae contains two homologues of bacte
rial IscA proteins, designated Isa1p and Isa2p, Bacterial IscA is a product
of the ise (iron-sulfur cluster) operon and has been suggested to particip
ate in Fe-S cluster formation or repair. To test the function of yeast Isa1
p and Isa2p, single or combinatorial disruptions were introduced in ISA1 an
d ISA2. The resultant isa Delta mutants were viable but exhibited a depende
ncy on lysine and glutamate for growth and a respiratory deficiency due to
an accumulation of mutations in mitochondrial DNA. As with other yeast gene
s proposed to function in Fe-S cluster assembly, mitochondrial iron concent
ration was significantly elevated in the isa mutants, and the activities of
the Fe-S cluster-containing enzymes aconitase and succinate dehydrogenase
were dramatically reduced. An inspection of Isa-like proteins from bacteria
to mammals revealed three invariant cysteine residues, which in the case o
f Isa1p and Isa2p are essential for function and may be involved in iron bi
nding. As predicted, Isa1p is targeted to the mitochondrial matrix. However
, Isa2p is present within the intermembrane space of the mitochondria. Our
deletion analyses revealed that Isa2p harbors a bipartite N-terminal leader
sequence containing a mitochondrial import signal linked to a second seque
nce that targets Isa2p to the intermembrane space. Both signals are needed
for Isa2p function. A model for the nonredundant roles of Isa1p and Isa2p i
n delivering iron to sites of the Fe-S cluster assembly is discussed.