High-throughput gene sequencing has revolutionized the process used to iden
tify novel molecular targets for drug discovery. Thousands of new gene sequ
ences have been generated but only a limited number of these can be convert
ed into validated targets likely to be involved in disease. We describe her
e some of the approaches used at SmithKline Beecham to select and validate
novel targets. These include the identification of selective tissue gene pr
oduct expression, such as for cathepsin K, a novel osteoclast-specific cyst
eine protease. We also describe the discovery and functional characterizati
on of novel members of the G-protein coupled receptor superfamily and their
pairing with natural ligands. Lastly, we discuss the promises of gene micr
oarrays and proteomics, developing technologies that allow the parallel ana
lyses of tissue expression patterns of thousands of genes or proteins, resp
ectively.