The genetic structure of wild populations of Colletotrichum lindemuthi
anum was evaluated for virulence and molecular markers. Forty-five iso
lates were collected from five wild common bean populations located in
their South-Andean centre of origin. The five pathogen populations we
re monomorphic in their ITS regions, but 45 polymorphic markers were i
dentified using RAPDs. Polymorphism for virulence was also observed; 1
5 pathotypes were characterized on an international set of 12 differen
tials. A molecular variance analysis (AMOVA) showed that a very large
part of the total genetic variation was within populations. Statistica
l analysis showed that there was a weak though significant differentia
tion among the five populations for the RAPD and virulence markers. A
positive and significant correlation was found between geographic dist
ance and the distances from RAPD and virulence data, suggesting migrat
ion between adjacent populations along the Argentinian transect. Our r
esults suggest that the Andean wild isolates of C. lindemuthianum do n
ot reflect all the putative diversity found in the isolates from culti
vated common bean.