We studied genetic variation in 228 individuals of the Iberian hare (Lepus
granatensis) from five Portuguese populations, along with representatives o
f brown hare (Lepus europaeus) populations from Austria, France, and North
East Spain. Twelve protein loci (PEPA, PEPB, PEPC, HBA, HBB, GPI, HP, ALE,
GC, ATIII, BF and HPX) were studied by means of conventional electrophoresi
s and isoelectric focusing in free and immobilized pH gradients. A rich gen
e pool variability in all studied Iberian hare populations is suggested by
high values of average expected heterozygosity (H-e=0.15), rate of polymorp
hism (P=0.47) and mean number of alleles (A = 1.83). The observed low level
of genetic differentiation between regional Iberian hare samples (Fst = 0.
095) suggests a minor effect of geographical distance on the distribution o
f genetic diversity and substantial gene flow between populations. Genetic
differentiation between L. granatensis and L. europaeus was high and expres
sed by: i) several diagnostic loci (PEPA, HBA, HBB, and ALB), ii) differenc
es in allele frequencies, and iii) the presence of private alleles.