Ultrastructural and molecular phylogenetic data suggest that dinoflagellate
s diverged as a lineage possibly as early as the Precambrian. However, the
fossil record is problematic before the Mesozoic. Prom the mid Triassic tho
ugh, the fossil record of dinoflagellates is a rich source of information o
n Mesozoic-Cenozoic dinoflagellates especially the gonyaulacoids and peridi
nioids. From the sequence of appearance of species and tabulation types and
the impression of early morphological experimentation and later stabilizat
ion, the early Mesozoic radiation of dinoflagellates appears to be a real e
volutionary event: indeed, dinoflagellate morphology as we know it today ma
y originate in that event. This would explain why it is so difficult to int
erpret earlier fossils as dinoflagellates. However, that the dinoflagellate
lineage existed in some form in the pre-Mesozoic is supported by biogeoche
mical data. early results of which indicate that certain early Paleozoic ac
anthomorph acritarchs may belong to the lineage.
A surprising degree of consistency is observed between ultrastructural (inc
luding tabulational), coarse biochemical and molecular sequence data. For e
xample. sequence data provided by small subunit (SSU) rRNA support the hypo
thesis of progressive loss of histones within the dinoflagellates. Gymnodin
ioids have long been considered to be polyphyletic but are thought of gener
ally as forerunners to the strongly thecate groups such as gonyaulacoids an
d peridinioids. In molecular trees they appear in both early-derived and la
te-derived positions, but mostly the latter. SSU data clearly support the g
onyaulacoid/peridinioid ordinal separation, as does the fossil record. Pror
ocentroids are now thought to be the among the most derived dinoflagellates
(and presumably the morphologically similar dinophysoids), but SSU sequenc
es have so far failed to resolve the relationships of most gymnodinioids, p
eridinioids and prorocentroids (the so-called GPP complex) to one another.
However, they do suggest the origin of prorocentroids from peridinioids rat
her than gonyaulacoids and that gymnodinioids probably had several origins.