Blood cell production originates from a rare population of multipotent, sel
f-renewing stem cells. A genome-wide gene expression analysis was performed
in order to define regulatory pathways in stem cells as well as their glob
al genetic program. Subtracted complementary DNA Libraries from highly puri
fied murine fetal liver stem cells were analyzed with bioinformatic and arr
ay hybridization strategies. A large percentage of the several thousand gen
e products that have been characterized correspond to previously undescribe
d molecules with properties suggestive of regulatory functions. The complet
e data, available in a biological process-oriented database, represent the
molecular phenotype of the hematopoietic stem cell.