The growing carbonic anhydrase (CA) gene family includes 11 enzymatically a
ctive isozymes in mammals. Each of them has a characteristic cellular and s
ubcellular distribution pattern. In this report, we demonstrate for the fir
st time a nuclear protein with CA activity. A polypeptide recognized by CA
II antibodies was purified from several rat tissues using CA inhibitor affi
nity chromatography. This polypeptide of apparent 66 kDa mass was character
ized using amino acid sequencing and CA activity measurements. It appeared
to be identical to nonO/p54(nrb), a previously cloned and characterized RNA
and DNA binding nuclear factor. Recombinant nonO generated in baculovirus
bound to the CA inhibitor affinity chromatography matrix and revealed detec
table CA activity (25 units/mg). Hansson's histochemical staining of rat ly
mph nodes followed by light and electron microscopy showed nuclear CA activ
ity in lymphocytes, suggesting that the nuclear nonO protein is catalytical
ly active in vivo. These results demonstrate that a previously known transc
ription factor is a novel, nonclassical Ck Through its CA activity, the non
O may function in the maintenance of pH homeostasis in the nucleus.