Cs. Farmer et al., A leucine residue "gates" solvent but not O-2 access to the binding pocketof Phascolopsis gouldii hemerythrin, J BIOL CHEM, 275(22), 2000, pp. 17043-17050
A leucine residue, Leu-98, Lines the O-2-binding pocket in all known hemery
thrins. Leu-98 in recombinant Phascolopsis gouldii hemerythrin, was mutated
to several other residues of varying sizes (Ala, Val), polarities (Thr, As
p, Asn), and aromaticities (Phe, Tyr, Trp). UV-visible and resonance Raman
spectra showed that the di-iron sites in these L98X Hrs are very similar to
those in the wild type protein, and several of the L98X hemerythrins forme
d stable oxy adducts, Despite the apparently tight packing in the pocket, a
ll of the L98X Hrs except for L98W, had second order O-2 association rate c
onstants within a factor of 3 of the wild type value. Similarly, the O-2 di
ssociation rate constant was essentially unaffected by substitutions of lar
ger (Phe) or smaller (Val, Thr) residues for Leu-98, L98Y Hr showed a 170-f
old decrease in the O-2 dissociation rate constant and a large D2O effect o
n this rate, which are attributed to a hydrogen-bonding interaction between
the Tyr-98 hydroxyl and the bound O-2. Significant increases in autoxidati
on rates were observed for all of the L98X Hrs other than X = Tyr. These in
creases in autoxidation rates are attributed to increased solvent access to
the binding pocket caused by inefficient packing (Phe), smaller size (Val,
Ala), or increased polarity (Thr, Asp, Asn) of the residue 98 side chain.
A leucine at position 98 appears to have the optimal size, shape, and hydro
phobicity for inhibition of solvent access. Thus, "gating" of small molecul
e access to the binding pocket of Hr by Leu-98 is not evident for O-2, but
is evident for solvent.