Brain tumors pose a particular challenge to molecular oncology. Many differ
ent tumor entities develop in the nervous system and some of them appear to
follow distinct pathogenic routes. Molecular genetic alterations have incr
easingly been reported in nervous system neoplasms. However. a considerable
number of affected genes remain to be identified. We present here a compre
hensive allelotype analysis of 466 nervous system tumors based on loss of h
eterozygosity (LOH) studies with 129 microsatellite markers that span the g
enome. Specific alterations of the EGFR. CDK4. CDKN2A, TP53. DMBTI. NF2, an
d PTEN genes were analyzed in addition. Our data point to several novel gen
eric loci associated with bl ain tumor development, demonstrate relationshi
ps between molecular changes and histopathological features. and further ex
pand the concept of molecular tumor variants in neuro-oncology. This catalo
gue may provide a valuable framework Tol future studies to delineate molecu
lar pathways in many types of human central nervous system tumors.