The gas-phase proton affinities of 2- and 4-thiouracil and 2,4-dithiouracil
have been measured by means of Fourier transform ion cyclotron resonance (
FTICR) mass spectrometry. High-level ab initio calculations, in the framewo
rk of the G2(MP2) theory, have been carried out to establish the nature of
the protonation site. Thiouracils behave as bases of rather similar moderat
e strength in the gas phase, the 2,4-dithiouracil being the most basic of t
he three. In all cases, the protonation takes place at the heteroatom attac
hed to position 4, hence although, in general, thiocarbonyls are stronger b
ases than carbonyls in the gas phase, 2-thiouracil behaves as an oxygen bas
e. For 2-thiouracyl and 2,4-dithiouracil, the most stable protonated confor
mer is the enol-enethiol form that cannot be formed by either direct proton
ation of the corresponding neutral or a unimolecular tautomerization of the
oxygen or sulfur protonated species. We have shown that alternative mechan
isms involving the formation of hydrogen bonded dimers between the protonat
ed form and the neutral form, followed by appropriate proton transfers with
in the dimer, can be invoked to explain the formation of the most stable co
nformer.