Recent progress in the theory and technology of transcranial magnetic stimu
lation (TMS) is leading to novel approaches in brain mapping. TMS becomes a
powerful functional brain mapping tool when other imaging methods are used
to record TMS-evoked activity or when peripheral effects are observed as a
function of stimulus location. TMS-evoked activity currently can be record
ed by EEG, PET, and fMRI. In addition to providing indices of cortical exci
tability, these methods allow one to study brain connectivity directly, wit
hout the need for behavioral activations. When the coordinate systems in th
e different imaging modalities are combined, anatomical structures seen in
MRT and activation sites determined by PET, fMRI, or MEG/EEG can be used fo
r the selection of target areas in the brain. PET and fMRI can be used to m
ap the spatial distribution of TMS-evoked activity. On the other hand, the
combination of TMS and high-resolution EEG may often be the method of choic
e for basic neuroscience and for clinical diagnosis, for example, in the as
sessment of brain connectivity in patients suffering from neurodegenerative
diseases or head injuries.