Ecteinascidin-743 (ET-743) is a tetrahydroisoquinoline alkaloid isolated fr
om the tunicate Ecteinascidia turbinata currently under phase II clinical t
rials for its potent anticancer activity. ET-743 binds DNA in the minor gro
ove and forms covalent adducts with some sequence specificity. It selective
ly inhibits in vitro binding of the CCAAT box factor NF-Y, In this study, w
e assayed ET-743 function in vivo on the HSP70 promoter. On heat induction,
the drug blocks transcription rapidly at pharmacological concentrations an
d in a CCAAT-dependent manner, whereas the activity of the CCAAT-less simia
n virus 40 promoter is not affected. The effect is exerted at the mRNA leve
l. The distamycin-like alkylating tallimustine is inactive in these assays.
Binding of NF-Y and of the heat-shock factor is normal in ET-743-treated c
ells. Run-on analysis of several endogenous genes further proves that the d
rug has rapid, profound, and selective negative effects on transcription. T
hus, this marine-derived compound is a promoter-specific, transcription-int
erfering agent.