Ageratum conyzoides L., a weed species widely distributed throughout southe
ast Asia, frequently exhibits striking yellow vein symptoms associated with
infection by Ageratom yellow vein virus (AYVV), a member of the Geminiviri
dae (genus Begomovirus). Most begomoviruses have bipartite genomes (DNAs A
and B), but only a DNA A has been identified for AYVV. We demonstrate that
yellow vein disease of A. conyzoides results from co-infection by AYVV DNA
A (2,741 nt) and a circular DNA that is approximately half its size (1,347
nt) that we designate DNA beta. Apart from the sequence TAATATTAC, common t
o all geminiviruses and containing the initiation site of rolling circle re
plication, DNA beta shows negligible sequence homology either to AYVV DNA A
or to DNA B associated with bipartite begomoviruses. DNA beta depends on D
NA A for replication and is encapsidated by DNA A-encoded coat protein and
so has characteristics of a DNA satellite. However, systemic infection of A
. conyzoides by DNA A alone is sporadic and asymptomatic, and DNA A accumul
ation is reduced to 5% or less of its accumulation in the presence of DNA b
eta, Therefore, DNA A and DNA beta together form a previously unrecognized
disease-inducing complex. Our data also demonstrate that the nanovirus-like
DNA 1 component associated with infected A. conyzoides plays no essential
role in the disease and represents a satellite-like DNA, Furthermore, the s
atellite DNA previously found associated with tomato leaf curl virus is pro
bably a defective DNA beta homologue.