Diagrammatic approach to calculation of the fluctuation correlation matrixin a metabolic system

Citation
I. Rojdestvenski et Mg. Cottam, Diagrammatic approach to calculation of the fluctuation correlation matrixin a metabolic system, BIOSYSTEMS, 56(2-3), 2000, pp. 63-73
Citations number
35
Categorie Soggetti
Experimental Biology
Journal title
BIOSYSTEMS
ISSN journal
03032647 → ACNP
Volume
56
Issue
2-3
Year of publication
2000
Pages
63 - 73
Database
ISI
SICI code
0303-2647(200004/05)56:2-3<63:DATCOT>2.0.ZU;2-F
Abstract
We present here a simple diagrammatic approach for the time evolution of th e fluctuations in metabolite concentrations around the steady state. A fluc tuation correlation matrix is introduced to characterise the response in th e concentrations of metabolites to a singular initial fluctuation in one of the metabolites. We show how the temporal evolution of the correlation mat rix can be represented in the form of a series with individual terms corres ponding to pathways on a metabolic graph. The basic properties of such grap hs are studied and it is shown how each term in the series can be evaluated . A Monte-Carlo procedure is outlined to calculate the fluctuation correlat ion matrix. We discuss various properties of the graphical representation a nd discuss links to information theory that arise from it. (C) 2000 Elsevie r Science Ireland Ltd. All rights reserved.