Scanning tunneling microscopy with very high gap impedance reveals sev
eral stable molecular conformations of organic monolayers self-assembl
ed from alkanethiols on gold. Thermal annealing of the preassembled fi
lms favored well-packed large molecular domains that were studied in r
eal space with unprecedented detail and accuracy. At room temperature
the system has several stable molecular conformations, which implies t
hat chemisorption energies balance the energy of interaction between m
olecular chains. A similar probability of different conformations indi
cates almost equal total energies, which makes it an interesting-and c
hallenging-object for molecular dynamics simulations. Our results cont
ribute to a long-standing scientific debate on the structure of self-a
ssembled monolayers and provide the basis for an improved understandin
g of organic interfaces.