The phylogenetic position of the Acoela is a key problem in the understandi
ng of metazoan evolution. Recent studies based on 18S ribosomal DNA (rDNA)
sequences have placed the Acoela in an extremely basal position as the sist
er group to all other extant triploblastic animals, suggesting that the phy
lum Platyhelminthes is polyphyletic. In order to test the results obtained
with 18S rDNA, we sequenced elongation factor 1-alpha (EF1a) for the acoel
Convoluta roscoffensis and five species of Turbellaria (two polyclads, Lept
oplana tremellaris, and Prostheceraeus vittatus, and three triclads, Crenob
ia alpina, Schmidtea polychroa and Girardia tigrina). Phylogenetic analyses
of EF1a sequences show that the acoel sequences branch within the Platyhel
minthes, in opposition to the 18S rDNA data. Moreover, comparison of the ce
ntral variable region of EF1a shows similar sequence signatures between C.
roscoffensis and the three triclad species. Although EF1a sequences fail to
prove the monophyly of the phylum Platyhelminthes, they do not confirm the
early divergence of the Acoela.