A truncated form of cytochrome f from Chlamydomonas reinhardtii (an importa
nt eukaryotic model organism for photosynthetic electron transfer studies)
has been crystallized (space group P2(1)2(1)2(1); three molecules/asymmetri
c unit) and its structure determined to 2.0 Angstrom resolution by molecula
r replacement using the coordinates of a truncated turnip cytochrome f as a
model. The structure displays the same folding and detailed features as tu
rnip cytochrome f, including (a) an unusual heme Fe ligation by the alpha-a
mino group of tyrosine 1, (b) a cluster of lysine residues (proposed dockin
g site of plastocyanin), and (c) the presence of a chain of seven water mol
ecules bound to conserved residues and extending between the heme pocket an
d K58 and K66 at the lysine cluster. For this array of waters, we propose a
structural role. Two cytochrome f molecules are related by a noncrystallog
raphic symmetry operator which is a distorted proper 2-fold rotation. This
may represent the dimeric relation of the monomers in situ; however, the he
me orientation suggested by this model is not consistent with previous EPR
measurements on oriented membranes.