E. Smid-koopman et al., Gene expression profiles of human endometrial cancer samples using a cDNA-expression array technique: assessment of an analysis method, BR J CANC, 83(2), 2000, pp. 246-251
The recently developed cDNA expression array technique can be used to gener
ate gene-expression fingerprints of tumour specimens. To gain insight into
molecular mechanisms involved in the development and progression of cancer,
this cDNA expression array technique could be a useful tool, however, no e
stablished methods for interpreting the results are yet available, We used
the Atlas cancer cDNA expression array (Clontech, USA) for analysing total
RNA isolated from four human endometrial carcinoma samples (two cell-lines
and two tissue samples), one benign endometrial tissue sample and a human b
reast cancer cell-line, in order to develop a method for analysing the arra
y data. The obtained gene-expression profiles were highly reproducible, XY-
scatterplots and regression analysis of the logarithmic transformed data pr
ovided a practical method to analyse the data without the need of preceding
normalization. Three genes (Decorin, TIMP3 and Cyclin D1) were identified
to be differentially expressed between the benign endometrial tissue sample
and the endometrial carcinoma samples (tissue and cell-lines). These three
genes may potentially be involved in cancer progression. A higher degree o
f similarity in gene-expression profile was found between the endometrial s
amples (tissue and cell-lines) than between the endometrial samples and the
breast cancer cell-line, which is indicative for an endometrial tissue-spe
cific gene-expression profile. (C) 2000 Cancer Research Campaign.