Structural basis of peptide binding and presentation by the type I diabetes-associated MHC class II molecule of NOD mice

We have determined the crystal structure of I-A(g7), an integral component in murine type I diabetes development. Several features distinguish I-A(g7) from other non-autoimmune-associated MHC class II molecules, including nov el peptide and heterodimer pairing interactions. The binding groove of I-A( g7) is unusual at both terminal ends, with a potentially solvent-exposed ch annel at the base of the P1 pocket and a widened entrance to the P9 pocket. Peptide binding studies with variants of the hen egg lysozyme I-A(g7) epit ope HEL(11-25) support a comprehensive structure-based I-A(g7) binding moti f. Residues critical for T cell recognition were investigated with a panel of HEL(11-25)-restricted clones, which uncovered P1 anchor-dependent struct ural variations. These results establish a framework for future experiments directed at understanding the role of I-A(g7) in autoimmunity.