The New World primate Aotus nancymaae has been recommended by the World Hea
lth Organization (WHO) as a model for evaluation of malaria vaccine candida
tes, given its susceptibility to experimental infection with the human mala
ria parasites Plasmodium falciparum and Plasmodium vivax. We present here t
he nucleotide sequences of the complete cDNA of MHC-DQA1 and of the polymor
phic exon 2 segments of MHC-DQB1/DQB2. In a group of three nonrelated anima
ls captured in the wild, five alleles of MHC-DQA1 could be identified. They
all belong to one lineage, namely Aona-DQA1*27. This lineage has not been
described in any other New World monkey species studied. In a group of 19 u
nrelated animals, 14 Aona-DQB1 alleles could be identified which are groupe
d into the two lineages Aona-DQB1*22 and Aona-DQB1*23. These lineages have
been described previously in the common marmoset and cotton-top tamarin. In
addition, two Aona-DQB2 sequences could be identified which are highly sim
ilar to HLA-DQB2 sequences. Essential amino acid residues contributing to M
HC DQ peptide binding pockets number 1 and 4 are conserved or semi-conserve
d between HLA-DQ and Aona-DQ molecules, indicating a capacity to bind simil
ar peptide repertoires. These results fully support the use of Aotus monkey
s as an animal model for evaluation of future subunit vaccine candidates.