We describe two new methods of fluorescence sensing for use in high through
put screening (HTS). Modulation sensing transforms analyte-dependent intens
ity changes into a change in the low-frequency modulation signal. Polarizat
ion sensing transforms an intensity change into a change in polarization. B
oth methods are internally calibrated by using a reference film immediately
adjacent to the sample, which can be readily located on the HTS plate or o
n a nearby optical component and provides an intensity or polarization refe
rence. Modulation sensing and polarization sensing were both shown useful f
or measurements of fluorophore concentrations, pH, or calcium concentration
s in the wells of HTS plates. Sensing with a reference film provides the op
portunity to internally reference HTS measurements without the need for add
itions to the sample. This approach can provide standardization for assays
performed at different times.