By analysing the allelic frequencies at the D1S80 locus in 43 human po
pulations, we show that the locus is polymorphic globally and that it
can be used to discriminate between major racial groups and subpopulat
ions through phylogenetic analysis. Although the use of informative mu
ltiple loci generally provides more accurate phylogenetic relationship
s, in instances where time and/or target DNA availability is limited,
D1S80 could provide useful data to discriminate between human groups.
Also, knowledge of which loci independently provide accurate phylogene
tic relationships, such as the D1S80, can be used to design more accur
ate multi-locus combinations. In addition, allele frequencies at the l
ocus are reported, for the first time, for Bahamian individuals of Afr
ican origin and for Chimila, Bari, and Navajo (Canoncito Valley) nativ
e Americans. Allelic data was obtained using standard polymerase chain
reaction (PCR) techniques. In the four new populations, 65 genotypes
and 20 segregating alleles were observed. All populations conformed to
Hardy-Weinberg expectations except the Chimila.