An annual water budget for Florida Bay, the large, seasonally hypersaline e
stuary in the Everglades National Park, was constructed using physically ba
sed models and long-term (31 years) data on salinity, hydrology, and climat
e. Effects of seasonal and interannual variations of the net freshwater sup
ply (runoff plus rainfall minus evaporation) on salinity variation within t
he bay were also examined. Particular attention was paid to the effects of
runoff, which are the focus of ambitious plans to restore and conserve the
Florida Bay ecosystem. From 1965 to 1995 the annual runoff from the Evergla
des into the bay was less than one tenth of the annual direct rainfall onto
the bay, while estimated annual evaporation slightly exceeded annual rainf
all. The average net freshwater supply to the bay over a year was thus appr
oximately zero, and interannual variations in salinity appeared to be affec
ted primarily by interannual fluctuations in rainfall. At the annual scale,
runoff apparently had little effect on the bay as a whole during this peri
od. On a seasonal basis, variations in rainfall, evaporation, and runoff we
re not in phase, and the net freshwater supply to the bay varied between po
sitive and negative values, contributing to a strong seasonal pattern in sa
linity, especially in regions of the bay relatively isolated from exchanges
with the Gulf of Mexico and Atlantic Ocean. Changes in runoff could have a
greater effect on salinity in the bay if the seasonal patterns of rainfall
and evaporation and the timing of the runoff are considered. One model was
also used to simulate spatial and temporal patterns of salinity responses
expected to result from changes in net freshwater supply. Simulations in wh
ich runoff was increased by a factor of 2 (but with no change in spatial pa
ttern) indicated that increased runoff will lower salinity values in easter
n Florida Bay, increase the variability of salinity in the South Region, bu
t have little effect on salinity in the Central and West Regions.