Performance of MOPAC on parallel computers

Citation
Ha. Fruchtl et al., Performance of MOPAC on parallel computers, J MOL ST-TH, 506, 2000, pp. 87-97
Citations number
22
Categorie Soggetti
Physical Chemistry/Chemical Physics
Journal title
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM
ISSN journal
01661280 → ACNP
Volume
506
Year of publication
2000
Pages
87 - 97
Database
ISI
SICI code
0166-1280(20000714)506:<87:POMOPC>2.0.ZU;2-7
Abstract
Key parts of the semiempirical MOPAC program package have been ported to pa rallel computers using the MPI message passing-library. Parallel routines a re available for the calculation of vibrational frequencies and electrostat ic potentials, as well as for energies of large biomolecules via the linear -scaling MOZYME self-consistent-held method. The parallelisation strategies used are discussed, and performance measurements for benchmark calculation s on three different parallel computers are presented. Frequency and ESP ca lculations show good scaling for up to eight nodes, independent of hardware and communications software. MOZYME calculations scale reasonably well if a fast implementation of MPI is available. (C) 2000 Elsevier Science B.V. A ll rights reserved.