Rhizosphere processes play a key role in nutrient cycling in terrestrial ec
osystems. Plant rhizodeposits supply low-molecular weight carbon substrates
to the soil microbial community, resulting in elevated levels of activity
surrounding the root. Mechanistic compartmental models that aim to model ca
rbon flux through the rhizosphere have been reviewed and areas of future re
search necessary to better calibrate model parameters have been identified.
Incorporating the effect of variation in bacterial biomass physiology on c
arbon flux presents a considerable challenge to experimentalists and modell
ers alike due to the difficulties associated with differentiating dead from
dormant cells. A number of molecular techniques that may help to distingui
sh between metabolic states of bacterial cells are presented. The calibrati
on of growth, death and maintenance parameters in rhizosphere models is als
o discussed. A simple model of rhizosphere carbon flow has been constructed
and a sensitivity analysis was carried out on the model to highlight which
parameters were most influential when simulating carbon flux. It was obser
ved that the parameters that most heavily influenced long-term carbon compa
rtmentalisation in the rhizosphere were exudation rate and biomass yield. I
t was concluded that future efforts to simulate carbon flow in the rhizosph
ere should aim to increase ecological realism in model structure.