HIV drug therapy often fails because of the appearance of multidrug-resista
nt virus. There are two possible scenarios for the outgrowth of multidrug-r
esistant virus in response to therapy, Resistant virus may preexist at low
frequencies in drug-naive patients and is rapidly selected in the presence
of drugs. Alternatively, resistant virus is absent at the start of therapy
but is generated by residual viral replication during therapy. Currently av
ailable experimental methods are generally too insensitive to distinguish b
etween these two scenarios, Here we use deterministic and stochastic models
to investigate the origin of multidrug resistance. We quantify the probabi
lities that resistant mutants preexist, and that resistant mutants are gene
rated during therapy. The models suggest that under a wide range of conditi
ons, treatment failure is most likely caused by the preexistence of resista
nt mutants.