Individuals coming from the same subpopulation are more likely to share del
eterious mutations at any given locus than hybrids formed between parents f
rom different populations. Offspring of migrants therefore may experience h
eterosis and have higher fitness than resident individuals. This will, in t
urn, result in the immigrant alleles being present in higher frequencies th
an predicted from neutral expectations and thus a higher effective migratio
n rate. In this paper we derive a formula to calculate the effective migrat
ion rate in the presence of heterosis. It is shown that the effect of heter
osis on the migration rate can be substantial when fitness reduction within
local populations is severe. The effect will be more pronounced in species
with relatively short map lengths. Furthermore the heterosis effect will b
e highly variable throughout the genome, with the largest effect seen near
selected genes and in regions of high gene density.