On the distribution of the bulk-solvent correction parameters

Citation
Nm. Glykos et M. Kokkinidis, On the distribution of the bulk-solvent correction parameters, ACT CRYST D, 56, 2000, pp. 1070-1072
Citations number
14
Categorie Soggetti
Chemistry & Analysis
Journal title
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
ISSN journal
09074449 → ACNP
Volume
56
Year of publication
2000
Part
8
Pages
1070 - 1072
Database
ISI
SICI code
0907-4449(200008)56:<1070:OTDOTB>2.0.ZU;2-J
Abstract
The distribution of the bulk-solvent correction parameters (B-sol, k(sol)) (as determined with an exponential scaling algorithm based on Babinet's pri nciple) for 219 crystal structures deposited in the Protein Data Bank is pr esented. The distribution shows that (i) the range of values observed is fa r wider than the usually cited parameter range, (ii) the observed k(sol) va lues do not correlate with their assumed physical meaning and (iii) the two parameters are not independent and a reasonable agreement with the experim ental data can be obtained through the application of a simple exponential function. These findings are interpreted in terms of the inability of the c urrently used algorithms to uncouple the values of the two parameters durin g macromolecular refinement.