Sj alpha elements, short interspersed element-like retroposons bearing a hammerhead ribozyme motif from the genome of the Oriental blood fluke Schistosoma japonicum

Sm alpha is a short interspersed element (SINE)-like retroposon that occurs in high copy number of the genome of the human blood fluke Schistosoma man soni. The sequence of the consensus Sm alpha element includes the hallmark features of SINE-like elements including a promoter region for RNA polymera se III, an AT-rich stretch at its 3'-terminus, a short length of 500 bp or less, and short direct repeat sequences flanking the insertion site. Intere stingly, the sequence of Sm alpha also encodes an active ribozyme bearing a hammerhead domain. Contrary to the recent findings of Ferbeyre et al. (Mol . Cell. Biol. 18 (1998) 3880-8) that indicated that Sm alpha-like elements were absent from the genome of the Oriental blood fluke Schistosoma japonic um, we report here that the genome of S. japonicum does contain a family of Sm alpha-like retroposons, elements that we have named the Sj alpha family . Like Sm alpha, Sj alpha elements are SINE-like in structure and sequence, are present at high copy number interspersed throughout the S. japonicum g enome, and contain an ostensibly functional, hammerhead ribozyme motif. The presence of these elements in all species of Schistosoma so far examined s uggests that the hammerhead domain was acquired by vertical transmission fr om a common schistosome ancestor. (C) 2000 Elsevier Science B.V. All rights reserved.