Little is known about the genetic alterations that occur during the progres
sion of thyroid neoplasms. To understand better the biology of thyroid tumo
rs, we investigated several genetic loci in benign and malignant thyroid ne
oplasms. Forty-one thyroid tumors (6 adenomas, 16 papillary, 14 follicular,
and 5 anaplastic carcinomas) were studied. Normal and tumor cells were mic
rodissected from paraffin-embedded tissues. DNA was used for polymerase cha
in reaction-based loss of heterozygosity (LOH) analysis with the following
markers: D1S243 (1p35-36), D1S165 (1p36) and D1S162 (1p32), TP53 (17p13), a
nd INT-2 (11q13). Immunohistochemistry for Ki-67 was performed. The Ki-67 l
abeling index (LI) was the percentage of positive tumor cells. LOH at Ip wa
s seen in 2 of 5 (40%) informative cases of anaplastic carcinoma (2 of 2 at
D1S162 and 1 of 2 at D1S165) and in 2 of 11 (18%) informative cases of fol
licular carcinoma (2 of 7 at D1S243, 2 of 7 at D1S165, and 1 of 6 at D1S162
). One anaplastic (20%) and two follicular carcinomas (14%) had LOH in at l
east two of the Ip loci analyzed. None of the adenomas and papillary carcin
omas had LOH at these loci. LOH at 17p and 11q13 were infrequent. Ki-67 LI
was 1.4, 7, 16, and 65% in adenomas, papillary, follicular, and anaplastic
carcinomas, respectively. Allelic loss at Ip may occur in aggressive types
of thyroid carcinoma and may be a marker of poor prognosis. LOH at Ip may r
epresent a late genetic event in thyroid carcinogenesis. LOH at 17p and 11q
13 (MEN gene locus) is uncommon in thyroid neoplasms.