Secondary structure and calcium-induced folding of the Clostridium thermocellum dockerin domain determined by NMR spectroscopy

Assembly of the cellulosome, a large, extracellular cellulase complex, depe nds upon docking of a myriad of enzymatic subunits to homologous receptors, or cohesin domains, arranged in tandem along a noncatalytic scaffolding pr otein. Docking to the cohesin domains is mediated by a highly conserved dom ain, dockerin (DS), borne by each enzymatic subunit. DS consists of two 22- amino-acid duplicated sequences, each bearing homology to the EF-hand calci um-binding loop. To compare the DS structure with that of the EF-hand helix -loop-helix motif, we analyzed the solution secondary structure of the DS f rom the cellobiohydrolase CelS subunit of the Clostridium thermocellum cell ulosome using multidimensional heteronuclear NMR spectroscopy. The effect o f Ca2+-binding on the DS structure was first investigated by using 2D N-15- H-1 HSQC MMR spectroscopy. Changes in the spectra during Ca2+ titration rev ealed that Ca2+ induces folding of DS into its tertiary structure. This Ca2 + induced protein folding distinguishes DS from typical EF-hand-containing proteins. Sequential backbone assignments were determined for 63 of 69 resi dues. Analysis of the NOE connectivities and H-alpha chemical shifts reveal ed that each half of the dockerin contains just one alpha-helix, comparable to the F-helix of the EF-hand motif. Thus, the structure of the DS Ca2+-bi nding sub-domain deviates from that of the canonical EF-hand motif. (C) 200 0 Academic Press.